rs52012444 SNP Detail

Summary

• ID
  rs52012444
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGTAAAGG GTCCTCTGAA
  GGGGAGATGG TCAGGAATGT CTGTTACCCG CTTGAGCTGG GTGTGATGAA TCCAGGGGGT
  GATCCCAGCA ACCTTGATAG CAATGGGTGT GGTAAGAACG ATAGGATTCG GTCCATGATT
  CCTATTGAGG AACAATAGGA AGGTTCCACG ATTCAGGGAC AATCAAGAAC ACTTTTCTCG
  S
  CTGTATTCAC CTTGAGCCTA CTTCCTTGTC CTAGCCCAAT GTCAAAATCT TGCCTGAGCC
  TACTCCCTCG TCCTAGCCCA GTGTAAATAT TGTCAATATC CCTGAAGCAG CACCAAGAGC
  TCTCCACAAT GCAAGAGACA GATCGAGGGA GGGCTGCAGG CCATTACCAC GCCAGCCCAG
  AGTGTATTTC TCATAGCCTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030201	ENSMUSSNP1222614	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52012444					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622585 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1109 bp upstream
Rr480227	regulatory region 480227	798 bp proximal
Rr480228	regulatory region 480228	896 bp proximal
Rr480229	regulatory region 480229	1516 bp proximal