rs52011705 SNP Detail

Summary

• ID
  rs52011705
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139824212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAG GCATTGGAAA GCCTGGCCTG
  Y
  GGTCCGGCTC CATCACAGGT CACCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147690559	ENSMUSSNP6576390	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321387259	CHEV_4_139652816	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs52011705					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139824212 () rs orientation: forward

Symbol	Name	Function Class
Gm69840	predicted gene, 69840	1515 bp downstream
Igsf21	immunoglobulin superfamily, member 21	Intron
Rr603368	regulatory region 603368	411 bp distal