rs52009487 SNP Detail

Summary

• ID
  rs52009487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:62367024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGATCAAACT TCATACTTCA AGCTACTGCT CTTTCCCATT
  CTTACAACAT CCAATGAAAT AATTCAGTCT CTGAGAAGTA AAATTTGTCA CGTGAAACTT
  Y
  AATTTAATTG TATGGCTGAT TATGCACTTG TATTCATTAA GTGGAATTTG TCATTTACTT
  TTATGTAGAA ATTGGGTGCT CATTTTCCTT TGCTTCTTAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss62821697	NES17372935	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs52009487					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62821697	NES17372935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:62367024 () rs orientation: forward

Symbol	Name	Function Class
Gm52291	predicted gene, 52291	within coordinates
Gm65778	predicted gene, 65778	963 bp upstream