rs52006071 SNP Detail

Summary

• ID
  rs52006071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:19802016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GAGGGTGAGA TAGGAGCTTG
  Y
  TACCCTGGAT GTGGCTCAAC CTTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss139192934	ENSMUSSNP4085010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52006071					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:19802016 () rs orientation: forward

Symbol	Name	Function Class
Gm62728	predicted gene, 62728	802 bp upstream
Nid2	nidogen 2	Intron
Rr389324	regulatory region 389324	within coordinates
Rr488149	regulatory region 488149	813 bp distal
Rr488150	regulatory region 488150	1813 bp distal
Rr488151	regulatory region 488151	673 bp distal
Tssr124369	transcription start site region 124369	1023 bp downstream
Tssr124370	transcription start site region 124370	994 bp downstream
Tssr124371	transcription start site region 124371	980 bp downstream
Tssr124372	transcription start site region 124372	656 bp downstream
Tssr127556	transcription start site region 127556	802 bp upstream