rs52006056 SNP Detail

Summary

• ID
  rs52006056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACTATAA TTATTTCCAG
  GCCCACCTTC AAAATACATT TTATATATAT CAGCATTTAA TGTACGCCAC TAGAATACTG
  AACAAGGGTG TCATTTGACT CATGGTAGCC AGTTGGGCCT CTCTGCACCA TTAATTTTCA
  AGCAATTCCT GAGGCAGACA GATACAAACA TATTATTTTG TCTTTACAGA CAGAGGAAGT
  Y
  GAGACACGAG GGACAAATGC TTACCCAATA GCAGTAGGAG ATCTCGGTAC ACACCTCTGA
  TTTCTACCCC CACTGTCTCT TGAACAACTA GCTTATCCTG TCCAGCTTCC ACCCACCTTG
  CCTCAGAGAA AGATCTAAAG CACAAATGTG TGCACATCTT CTTTTTTGTT GAGAATACTC
  TCTCTCTCTC TCTCTCTCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60894249	NES15959628	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52006056					SNP	C	C	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894249	NES15959628	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	1079 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631669	regulatory region 631669	1700 bp distal
Rr631670	regulatory region 631670	1149 bp distal
Rr631671	regulatory region 631671	879 bp distal
Rr631672	regulatory region 631672	976 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	1159 bp upstream
Tssr61256	transcription start site region 61256	1729 bp upstream
Tssr61257	transcription start site region 61257	1258 bp upstream
Tssr61258	transcription start site region 61258	1153 bp upstream
Tssr61259	transcription start site region 61259	1085 bp upstream