rs52005665 SNP Detail

Summary

• ID
  rs52005665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40942282 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAACAGA CATCTGACTC
  TGGATCTCAG CCATTACAAA AACAAGTCGT GTTTTTCTCT GATAGGTACA GTTCGTTTCT
  GTTCTTTACT GATGAGATTA TAGTTTATCC TTCTACCCCT GCTTGACTAC ATGTTCCTAA
  ATAAAGGGAA GGAAGCTGCT TTGCAGTTGG TTTCCAAAAT GCTTCTCTTT GAATGCTGCC
  Y
  GCTGTCCGTT CCCGTTTTTG TGCTTTCCAT TTGAAAGCTT TCTAGGATCA TAGTGAGAGC
  AGTGTCTTCT GTCTTCTTTG CTATAATACT GGCTGGTTGC TGGTTCTTGT GTCATCAGTA
  TAATCTCGTG AACTTTGTGC TTTCTAGAAA CTCATAGTTC TTGACCTCAT TTATTCATTG
  TTAAGTGAAC TTTAAACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60399931	NES15889002	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52005665					SNP	T	T	T	T	T	T	T	T	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60399931	NES15889002	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40942282 () rs orientation: forward

Symbol	Name	Function Class
Gm30289	predicted gene, 30289	within coordinates
Larp1b	La ribonucleoprotein 1B	Intron
Rr575879	regulatory region 575879	997 bp proximal
Rr575880	regulatory region 575880	1075 bp proximal