rs52004976 SNP Detail

Summary

• ID
  rs52004976
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:120613990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A TCAGTCTTTG CTACACCAAT GCCTACCCTA CCAGGCAGGT
  TTACAGTGAG CCATAGGTGG CAAGGAAATC CTAAGGATAC CAGGCCTCAG CTTGAAGGGT
  S
  TAGTATAAGC CTCTTCCCTA CACAACCTCA CCCTTTGAGC CCAAAGCCCA GGGAGTTGTC
  TACCAGATTA TGGCAAACTG ATCTTTGCTT TTCCTGGCAT T                    
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss147347037	ENSMUSSNP7218769	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs52004976					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:120613990 () rs orientation: forward

Symbol	Name	Function Class
Nfyc	nuclear transcription factor-Y gamma	645 bp downstream
Rr598864	regulatory region 598864	1008 bp distal
Rr598865	regulatory region 598865	1367 bp distal
Rr598866	regulatory region 598866	1290 bp distal