rs52002617 SNP Detail

Summary

• ID
  rs52002617
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:80945454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTGTTAA GAATGGAGAA
  TTCAGGAAAG GTATTAAATT CCTTAATCGA AACACTGTAT TATGGGAAGG CAGGCACCAA
  TAAAGAATTA GGTGAGAAAT ACAGAGGTCA AGAGGCCACT TGGACATTTT CAAAGGAATT
  GGTTATGGTT TTTCTCTTGA ACTTTTTTTT TTTTTTTAAA ACGTGCCTTT GTGCCCCGAA
  M
  CCCTCACCTT TTGGTGGTGT ATTTTTTTGT ATGTTCATGA ATGACTATTT TGTGTGTGTT
  GGAAGCGATC TAATCCTGCA TAGGAAATGA GAATTACTTT CAGCTTTCAA GTGTACCTGA
  AATGTTTAGA AAACTTTCAG ATGCGAGTTC CCCTGGGCTG GGATTGCACA GAGCTGGAGA
  AAAGCCTCTT TCATAAGTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135389037	ENSMUSSNP618948	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs52002617					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:80945454 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13283	CpG island 13283	320 bp distal
Gm16000	predicted gene 16000	within coordinates
Gm64611	predicted gene, 64611	within coordinates
Pdgfc	platelet-derived growth factor, C polypeptide	Intron
Rr578682	regulatory region 578682	1721 bp distal
Rr578683	regulatory region 578683	1038 bp distal
Rr578684	regulatory region 578684	1687 bp distal
Rr578685	regulatory region 578685	1631 bp distal
Rr578686	regulatory region 578686	1179 bp distal
Rr578687	regulatory region 578687	475 bp distal
Rr578688	regulatory region 578688	157 bp distal
Rr578689	regulatory region 578689	700 bp proximal
Rr578690	regulatory region 578690	1226 bp proximal
Rr578691	regulatory region 578691	1413 bp proximal
Tssr29617	transcription start site region 29617	1776 bp downstream
Tssr29618	transcription start site region 29618	1409 bp downstream
Tssr29619	transcription start site region 29619	1136 bp downstream
Tssr29620	transcription start site region 29620	1071 bp downstream
Tssr29621	transcription start site region 29621	942 bp downstream
Tssr29622	transcription start site region 29622	922 bp downstream
Tssr29623	transcription start site region 29623	756 bp downstream