rs52002074 SNP Detail

Summary

• ID
  rs52002074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:5540562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGAAGCCA ATTAAGGTCC AAGAAGGAGT CATTTTGGGC
  TTGAAGATGG CCATCTACAA GCCAAGATGA GAAACATGAC TAGTTATGCT CCCACTTTGG
  W
  CTTCTGGGCT GTAGAATTGT GAGGCAATGA ATTTCTGTTG TTTAAGGTAC CCAGTCAGGG
  GCATGTTGTT AGGCCTTATT GAAAATACAC TTAAAAAGA                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132937718	ENSMUSSNP1471479	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
ss321729481	CHEV_6_5490562	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52002074					SNP	T	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:5540562 () rs orientation: forward

Symbol	Name	Function Class
D6Mit179	DNA segment, Chr 6, Massachusetts Institute of Technology 179	64 bp distal
Rr407129	regulatory region 407129	1895 bp distal
Rr626156	regulatory region 626156	211 bp distal