rs52001952 SNP Detail

Summary

• ID
  rs52001952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152518597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TACCCCATGG CTCGTCAAGT TGGTATCTTA CAAAGCATGA
  ATTTTTCCCA TTCTGGTAGG TCAGAAATGA AATCCTGATA CACTGTGAAA GTTGACAGAC
  Y
  GTCGATCTCA GAAATGGAGT GCTTGCTGAG CCGTGTGTGA GCCTCTGGAT TCGTTCCCCG
  GTGCCACGGA AAGTTCTAAA AGAATAAGGG TTAGAGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147971517	ENSMUSSNP3017716	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs52001952					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152518597 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
H13	histocompatibility 13			Intron
				Noncoding-Transcript-Variant
Rr567423	regulatory region 567423			927 bp distal
Rr567424	regulatory region 567424			1469 bp proximal
Rr567425	regulatory region 567425			1706 bp proximal
Rr567426	regulatory region 567426			1779 bp proximal
Tssr20814	transcription start site region 20814			894 bp upstream