rs52001178 SNP Detail

Summary

• ID
  rs52001178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117660342 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC TTTCTAACTC CTGGACAGAT
  Y
  CCATCCTGGA GTAGGCTGGA TGGTA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135694701	ENSMUSSNP3606511	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320900603	CHEV_3_117569611	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52001178					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117660342 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13747	CpG island 13747	1807 bp proximal
Rr583873	regulatory region 583873	627 bp distal
Rr583874	regulatory region 583874	205 bp proximal
Snx7	sorting nexin 7	Intron