rs52000541 SNP Detail

Summary

• ID
  rs52000541
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118999855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGTTT ACCTGCCTGT GTACAAAATT
  K
  TATGTGGACA TATGTTCTCA TTTCC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147324449	ENSMUSSNP4943801	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320473958	CHEV_2_118995110	CHEVERUD	SCREENING_POP	f	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs52000541					SNP	T	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118999855 () rs orientation: forward

Symbol	Name	Function Class
Gchfr	GTP cyclohydrolase I feedback regulator	Intron
Rr563426	regulatory region 563426	1591 bp distal
Rr563427	regulatory region 563427	1738 bp distal
Rr563428	regulatory region 563428	991 bp distal
Tssr19604	transcription start site region 19604	1595 bp downstream
Tssr19605	transcription start site region 19605	1539 bp downstream