rs52000328 SNP Detail

Summary

• ID
  rs52000328
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:78691828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCCTTCT TCCCTTCTTT
  CATCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC CTGTTCTTCT
  ATCTCTCTTT CTTTTTAAGA TAAAGAGATG AAGAATGAGT CTAAATTTGG GGGAGATGCA
  AAGTGGGACA AAGGACTTGG AGGGATGGAA AGAGAAGAAC GTTTGGTGAG GATGTGATGT
  W
  TGAGAAAAGA ATAAAAGGAA AAAAATCAGA GATAATGCAT TTTATTAATT AGTGATTGGT
  GGGGAAAGGC TTCCCTTTGA GGTAAACCTC ACGCGGCCTG GACATGGACA GGATTGACAG
  AATGATAGCT CTTTCTCGAT TCCGTGGTTG GTGGGGTAAG GCTGTTCTTA GTTGGCAGAG
  CAAGTTGTCT GGTTAATTAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	MSM/Ms
ss146655430	ENSMUSSNP547121	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	MSM/Ms
rs52000328					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:78691828 () rs orientation: forward

Symbol	Name	Function Class
Rr594151	regulatory region 594151	61 bp proximal
Tssr37651	transcription start site region 37651	99 bp upstream
Tssr37652	transcription start site region 37652	223 bp upstream
Tssr37653	transcription start site region 37653	450 bp upstream