rs51999679 SNP Detail

Summary

• ID
  rs51999679
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8103927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAAAGA TTAGTTTCAA
  CATTTACACA GGAATGAGTC TCTCCATGAA AGGCATGTAT ACACATACCC CACCACTCAA
  GCTGGAAAGG AGAGAAAGTT AAGTCTCATC AGAGATTCAA TCAATAATGC TGTATTATTA
  TAGCAAGCCT CTTTTCCTAC TAGTGATGAA AATGAATTCA TTGTGTTAAG AAAATTTGTC
  W
  GTAATACTTT CTAGAATTGG ATTACTGATT CACTGTTTTG TGTTCGAATT TATAAAAATT
  CTCTGAAAAT CTAAGTTCAT AAGGATTCAT GGAAAATCTT GAATAAGCTG TGCTAATCAC
  ATGATCTATC TGTCTTACCC TGATCTTATA TCTATAAAGT CTTAATACTC TGTGCCTTTT
  AGGGAAAAGA AGCCACAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132961579	ENSMUSSNP5941242	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51999679					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8103927 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	1180 bp proximal
Rr626348	regulatory region 626348	1001 bp proximal
Rr626349	regulatory region 626349	1879 bp proximal