rs51997486 SNP Detail

Summary

• ID
  rs51997486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152495702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACGTCTG CTTATAGCTG
  TAATCTTCTT CCATGAAGCT GCTCTGTAAG TAAATCGTGA GTATATACAG CAAATAACAC
  ATATCCTAAA TATATTCTGA GAGTCCCAAA GAGCCGAAGG GAAGTGCTTA CCTCTCAGTG
  TGGCAGGACG GATGAGATAT GCTGTCACTG AACATTTCGG AAGTTGTAAA TATGCTGTGC
  R
  CTTGCTCTCA CTGCTGCTTA GGCACACACG GGGGGACAGC CATGGTAACT GGTTTCTTCC
  TCTACTGGGC TTCGGTGCCT TCTTAAGCTG CTCTGTGATA TTCCTGGTTC TACTGGTATT
  TTTTCTCTTC TGCCCCATGG TGGTGTTGAG GTTTGAGAAC AGGGAAGTAG ACCAATGGAC
  CTCTGCAGAC ATGTCCTAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61101183	NES16612823	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51997486					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61101183	NES16612823	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152495702 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pigk	phosphatidylinositol glycan anchor biosynthesis, class K			Intron
				Noncoding-Transcript-Variant
Rr587606	regulatory region 587606			1835 bp proximal