rs51990800 SNP Detail

Summary

• ID
  rs51990800
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:109763621 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTCTCT ACGTTTGCTG
  TCTCATGCTT TTCAGTTGAA CTCAGCTTCT ATTTTTAACT TCAATTGAGC GGGGTTAAAA
  GGAACGTCTC GCCCCCTGCT GGCGCCCGTG GTCCCGGGAA GACCGGACAA AAGCCACCAC
  GTGGCTCACA TCCTGGGCTC AGTTTTCTTA GGAACCCAGA GCCCCATGCT TGCTAGGCAA
  G
  GGCCCCAACC CTGATCAACG CTTTAGCAGG CGTCCTTTTG CTCAAGTCTA GAGCGTCACT
  GGTGCCAACT CTCCAACACA GGGAGGAATT GGCTTTGCTT AATTTTGCTG CAGAGTGGGC
  TGGCCCTGCT AAATCCAGGG TACCGGGCAC TTAACACTGT GAGGTCGCTG TGCGGAGCTA
  GACTCTGGGC GCTCCCGTTT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145643881	ENSMUSSNP4708854	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51990800					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109763621 () rs orientation: forward

Symbol	Name	Function Class
Gm72506	predicted gene, 72506	within coordinates
Gm72511	predicted gene, 72511	within coordinates
Rr1426	regulatory region 1426	within coordinates
Rr407345	regulatory region 407345	4 bp distal
Rr653199	regulatory region 653199	1128 bp distal
Rr653200	regulatory region 653200	1149 bp distal
Rr653201	regulatory region 653201	within coordinates
Rr653202	regulatory region 653202	94 bp distal
Rr653203	regulatory region 653203	504 bp proximal
Rr653204	regulatory region 653204	511 bp proximal
Rr653205	regulatory region 653205	559 bp proximal
Rr653206	regulatory region 653206	582 bp proximal
Rr653207	regulatory region 653207	1636 bp proximal
Tssr2367	transcription start site region 2367	467 bp downstream
Tssr2368	transcription start site region 2368	1812 bp downstream
Tssr68492	transcription start site region 68492	93 bp downstream
Tssr74253	transcription start site region 74253	454 bp downstream
Tssr74254	transcription start site region 74254	1938 bp downstream