rs51989776 SNP Detail

Summary

• ID
  rs51989776
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:136146741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGAC CCTAAACATT
  TTATTTTGTA GCAGAGAAAG AGAGAACGCC TCTGTGTGTG TGTGTCCATG GAGGCTAGAA
  GGGTGGTAGG AGGGGAAGAA GCCAAGCCAC AAGGGGTTTG CATACCATGG GGTTAGGTCT
  CAGGCACACA GCATGCTCAG AAATCCCAGT GGAGATCTTG GGGGAGATCT CTGAGCTTTT
  Y
  AAGTCTTTCT CCACCAGCCC AGATTCATTA ACACAGCATT TCTCCCTCAA CATAATGCAA
  GTCATCTGGT TCAGAGTTGT CTGGTTTTGG AGAGCAACCC CTGCTAGGGA GTTTATCTGT
  AGTTGAAGGG ACTTGAGACT GTCTGTATTG GAAGCCATTG CCTGGTCAAG CTTGTCTTGG
  CAGTCTCCAG TAAGCTGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135935208	ENSMUSSNP3614316	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss320973867	CHEV_3_136103944	CHEVERUD	SCREENING_POP	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51989776					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136146741 () rs orientation: forward

Symbol	Name	Function Class
1700030L20Rik	RIKEN cDNA 1700030L20 gene	within coordinates
Rr585823	regulatory region 585823	1346 bp proximal