rs51988973 SNP Detail

Summary

• ID
  rs51988973
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119833324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGAAAAG CCACAGCTCT
  CCTTTGAACC CATGCTCACA CAATGGAAAT CGGTGGCAGT GACTACTAAA AGTAACCGTC
  AGGGTGACTG TACTTAGTGA GCCTGCTTTG ACTTAGTGGT ACATCCTTTT GTGGCACTTG
  TTGGCAAGCA GGGTGTAATG CTCTGGTAGA ACATAACTCC TGAAGAGCAT CACGTAGCCT
  R
  CAGCCTCCAC AGAGCTCAGC TCAGCCCAAG TCTCCAGGCT CCTCCCTGCC CAGCACCTCA
  GGAGGCTCAA ACCTTTTCTC TTCTTTTTTT CTTCTTCTTT GTTTTTTCTT TTTGAGACAC
  TCCCATGCCC AAAAATTTAG CCAAAGGACC AAGCTGAGGT ATAAGATTAG TGCATAAACC
  CACATTGCAA TAATATATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133593635	ENSMUSSNP4199196	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321929509	CHEV_6_119806381	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51988973					SNP	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119833324 () rs orientation: forward

Symbol	Name	Function Class
Rr380000	regulatory region 380000	1211 bp downstream
Rr637739	regulatory region 637739	1759 bp distal
Rr637740	regulatory region 637740	546 bp distal