rs51987666 SNP Detail

Summary

• ID
  rs51987666
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:19529641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTTCTACC TGTAAAATTA
  TCATAATTAC CTAATTCAAT TTTGATACAC TAAATTTTGT TTACAGAAAG TTTTTAACTG
  ACAAGATAGT GCTCACACAA AATATTTACA TTCAACAACA ACAACAAAAA TAGGTCTATT
  TGGCAACAGA AGATGTATGC TAGCCTTGAG GTTATCTGAT TTCTGTTTTA CATGGCACTG
  K
  TAGACAGCAT TCATAATTTA AATTTGCATG AAGCTAATAT ATACACGACA TACCTGTTGT
  CTATAGTGAA TAGATATTTT TTTTGTCATT GGTGAATGCA ACCACTTGGG TAGACAATTG
  CTATGTCAGC TGTATGCCAG ACCGAGTGAG ATGAGTGAGA TGTGAATAGT TTAGGATGAG
  AATAGTTTAG GGTCCCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626584	NES15515292	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51987666					SNP	G	G	T	G	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626584	NES15515292	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19529641 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	Intron
Tssr118551	transcription start site region 118551	1238 bp downstream
Tssr118552	transcription start site region 118552	485 bp upstream
Tssr118553	transcription start site region 118553	1615 bp upstream
Tssr121590	transcription start site region 121590	1123 bp upstream
Tssr121591	transcription start site region 121591	240 bp upstream
Tssr121592	transcription start site region 121592	298 bp downstream