rs51982785 SNP Detail

Summary

• ID
  rs51982785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:36667751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTT CGCTCATGCA TGTTCCTTCA
  R
  CTCTGAATGA AACTCTGGAG AAGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134784843	ENSMUSSNP3509022	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320703516	CHEV_3_36512524	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs51982785					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:36667751 () rs orientation: forward

Symbol	Name	Function Class
Bbs7	Bardet-Biedl syndrome 7	125 bp upstream
Cpgi13088	CpG island 13088	within coordinates
Rr575383	regulatory region 575383	328 bp distal
Rr575384	regulatory region 575384	within coordinates
Rr575385	regulatory region 575385	153 bp distal
Tssr28874	transcription start site region 28874	116 bp downstream
Tssr33039	transcription start site region 33039	235 bp upstream
Tssr33040	transcription start site region 33040	205 bp upstream
Tssr33041	transcription start site region 33041	173 bp upstream
Tssr33042	transcription start site region 33042	131 bp upstream
Tssr33043	transcription start site region 33043	102 bp upstream