rs51980785 SNP Detail

Summary

• ID
  rs51980785
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68954215 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAG TAGACAGTCT AGTCTACAGA
  S
  CTAGTTCTAG GACAGTCAAG GCCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135264703	ENSMUSSNP6625902	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320791804	CHEV_3_68850804	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51980785					SNP	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68954215 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13256	CpG island 13256	1358 bp distal
Gm65005	predicted gene, 65005	515 bp downstream
Rr578119	regulatory region 578119	1750 bp distal
Rr578120	regulatory region 578120	1979 bp distal
Rr578121	regulatory region 578121	629 bp distal
Rr578122	regulatory region 578122	1518 bp distal
Rr578123	regulatory region 578123	within coordinates
Tssr29529	transcription start site region 29529	1795 bp downstream
Tssr29530	transcription start site region 29530	1746 bp downstream
Tssr33526	transcription start site region 33526	1908 bp upstream
Tssr33527	transcription start site region 33527	1883 bp upstream