rs51979643 SNP Detail

Summary

• ID
  rs51979643
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:57513179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATAATCA GATAACTGCC
  TTTAGAACCT TCGGTCTAAT AAGGAAGATG AGGAAGCAAG CCAACAAATA AACAGTAAAA
  GACAAATCAC GTCTAAAGAG GGAACGGCTC AGGTGTGGCT GGAGAACACT GGGCAGCGGA
  TTTTACCGCG CTGAATCTAG TCAAGGCAGG ATGGATCTGA GCAGAAGACA ATAGCAGATG
  C
  CTTTCAGGCT GTATCAGCAC ACTCCCGGGC AGGTTTCATG CACAGGAATA CTGGTCAACA
  CTAAATTGAC TCCATGATTT TTTATGTGTG CGTGTTTTGG TTTTGTTTTG ATACTTTTTA
  AGTCTTTTTA AAAATATTCA TTTATTTATT TATTTATACA CTGTACACTA TAGCGGTCTT
  CAGACACTCC AGAAAATGGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss133241384	ENSMUSSNP5968313	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51979643					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57513179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17483	CpG island 17483	934 bp distal
Cpgi17484	CpG island 17484	327 bp distal
Gm45193	predicted gene 45193	within coordinates
Ppm1k	protein phosphatase 1K (PP2C domain containing)	726 bp upstream
Rr399669	regulatory region 399669	476 bp downstream
Rr631141	regulatory region 631141	779 bp distal
Rr631142	regulatory region 631142	278 bp distal
Tssr61156	transcription start site region 61156	799 bp upstream
Tssr61157	transcription start site region 61157	773 bp upstream
Tssr61158	transcription start site region 61158	747 bp upstream
Tssr61159	transcription start site region 61159	697 bp upstream
Tssr61160	transcription start site region 61160	681 bp upstream