rs51978601 SNP Detail

Summary

• ID
  rs51978601
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:19717655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTACAA TGAAGATCAG
  TCAGTCACTG GCCATGAATC AGCAGTCCAC TGTGTGCTAG GTTGAGTCTT GTGTGTTATA
  AATAGCCTGT TACTTGTGTT GAGCGAGGCA ATCTCTAGCC ACCTCCTGAG ACTCTCAATG
  GAGAGTCTGG CTTCCTGTCT GGGATAAAGA CATCAAAAGA TGTGTGGAAA GTCCTGTGGT
  M
  CACTGAAGTC TTGAGTGAGG GAAACAAGTT GATTCTGGCT GTGTTAGGAA GGGCAACAGG
  CGCTTTCACA GAGGCCAGCC AGGGTCTTAG AAGGAAGCAG CTGTCTCTAG CTACACTTGA
  GAGCAAGCCA AGAAAGTACA GGATTAAAGC TAAATCAGCA GAAGGTGTTT AGTTAGGGAC
  AATATGAAGA GCAGCCAAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376659	NES15883795	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51978601					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376659	NES15883795	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19717655 () rs orientation: forward

Symbol	Name	Function Class
Rr574018	regulatory region 574018	within coordinates
Rr574019	regulatory region 574019	951 bp proximal
Trim55	tripartite motif-containing 55	Intron