rs51975233 SNP Detail

Summary

• ID
  rs51975233
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153349278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGCTAAGG CTGTAATGCA
  GGCCACTAGG TCAACAACCG AGGCCTGAAA AATGAAGGCC TTCCAAAGTA TTTTCAAGGA
  TCGGTGCTGT AAGGCAGAAT AGAGAGGGAG GATTTTCACC TCGGCAAATG GAGAGCTAAG
  CGCCCTTGCT AAGAGGTTTG CAGAAAGCCT GAGGCTTAAC CAGAGAAGAA GAACCGAGCT
  S
  AGAAGGAACC AACCTCCCTG CTCAGCCCCA AGACTCTCGG GAATAAGTGT CAAGGACTCT
  TAACATTGGG CAGGAACATT TGGGGCTCCT GAGCAGACCC AACGCCATCT TCTTGCCTAT
  GAAGCACAGG AAACAGACTC CCCCTTAAGA TGCTTCCTGG GTCTAAGGAA GCCAAAACCA
  CCTCCAGAGC CCAAACCAAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136110329	ENSMUSSNP899701	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51975233					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153349278 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587714	regulatory region 587714			187 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant