rs51973302 SNP Detail

Summary

• ID
  rs51973302
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135718849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG TCAAAGCCTG TGGCGGGTGT
  T
  GAGGGAGCAG GAAGCCAAGA AAGCC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss145546448	ENSMUSSNP3621959	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss319993416	CHEV_1_137687688	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51973302					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135718849 () rs orientation: forward

Symbol	Name	Function Class
Rr372093	regulatory region 372093	968 bp upstream
Rr419278	regulatory region 419278	1961 bp distal
Rr419280	regulatory region 419280	810 bp distal
Rr419281	regulatory region 419281	1085 bp distal
Rr419282	regulatory region 419282	1126 bp proximal
Rr419283	regulatory region 419283	1758 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron