rs51971224 SNP Detail

Summary

• ID
  rs51971224
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:137008090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGAGGCCTG GATAGATCTA GAGGTAGCTT CTTGTCCAGG
  GTGGGTTGAT AGCTGGTTGC AGAATCTGGG CTGTCTGATG TCTCAACACC AGCCTGGGGG
  K
  AGGGGGGGGC GGGGAGCCAG GTGTGCCTCT ACCTACAAGC TCTGGGCAAG ACAGAGCCAG
  GAGCTAGGAA AGTTTTGCAG CCTGAGGCTT GGCAAGCCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147601389	ENSMUSSNP5939568	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
ss321362850	CHEV_4_136836694	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51971224					SNP	T	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137008090 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15125	CpG island 15125	1932 bp distal
Rr602577	regulatory region 602577	1769 bp distal
Rr602578	regulatory region 602578	1032 bp distal
Rr602579	regulatory region 602579	1821 bp proximal
Tssr44110	transcription start site region 44110	1577 bp upstream
Wnt4	wingless-type MMTV integration site family, member 4	Intron