rs51968418 SNP Detail

Summary

• ID
  rs51968418
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:100763858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGTGGGC TAAATGGAAC
  TCTGCTCTCT TTAGAAGGGC AGCCCTCTCC TTCCTCTCTC CTGACTCCAC CCCTGGGCAC
  TTAAGGGTGC CCTAGTGCCT GCCCTGCCTG TCTGCTCTCT CACAGGTCCA GGCTTCTGAG
  GTCCACCCCT ACCCCAACCT GAATTCATGA GGGCAGCTAT GGGCTGGCTA CCCAGGCAGG
  Y
  GCCTGAGGCT GAGACAGACT TTGGATGGCT TTTGAAAATC CACACGGAGG TTGATGGCTC
  TTCTAAGCAG AAAAAGAGCA AAAGGAGGCA GTGAACAAAC CGGTCTGGTG GGTTCCAGGA
  GAGAAAGGAG AGGAAAAGAG CTTGGGGCAT TTAAAAATGG ATTTAAACTC TAGCTTCAGT
  TTAAACTTGG AGATAGTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135541498	ENSMUSSNP6131402	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51968418					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100763858 () rs orientation: forward

Symbol	Name	Function Class
Rr581917	regulatory region 581917	within coordinates
Rr581918	regulatory region 581918	1894 bp proximal
Vtcn1	V-set domain containing T cell activation inhibitor 1	Intron