rs51967477 SNP Detail

Summary

• ID
  rs51967477
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:119550180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGGCCTG GAGGAGGCCA ATGAGGAAGG CCTGGGGGGA
  GGCCACCTTT ACCTTAGGTG CGAAGGCTAT GAGGCTTGAC GATGGAATGA AGAGGCAGGG
  M
  TGATCTCAGC CAACCTGCAG TGAGCTCTCA GGGCCAGCTA CCTTAAGGAT CATGTGCATG
  CAGACAGTCA TGGAATGACA TGTACAGTGC AATGGCAGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133591184	ENSMUSSNP2844037	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss321928765	CHEV_6_119523237	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51967477					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119550180 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Erc1	ELKS/RAB6-interacting/CAST family member 1			mRNA-UTR
				Noncoding-Transcript-Variant
Gm44317	predicted gene, 44317			within coordinates
Rr637716	regulatory region 637716			459 bp distal