rs51966340 SNP Detail

Summary

• ID
  rs51966340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122205500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGAAATCA CTAAGAATTT
  CATAGCTGCA GAGCCTAGGA TTCAAAACCA GATGTGTCCA GTTTTGAAAG CAGTGTTATT
  GTTTACTTAA TCATCCTGAG ACCTTACAAC CTAATCAGTT AAGAGCACAA AGTCTGAGCC
  CCATAGCTTC CGTTCAAAGT TCAGTGCCTT TGCCGTCTGC TCTGATACCT GGAAAGAAAA
  Y
  GTCCCTGGCT CAGAGGAGGA GACAAGAATA CTTCTGCCTC ACCAGGACAG GTGGTGCAGG
  CTAGATACTC AGGAGGCTGA GGCAGGAGGA TCACAAATTC AAGGTCTGCT CCAGGTACAG
  AGCAAGTTCA TGGCCAGCAA AATAACTTGG ATGGATCCTC CATCATAAAA ATGGGGAGAG
  GGCTCTGTCT ATAAGAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60442589	NES15946505	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51966340					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60442589	NES15946505	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122205500 () rs orientation: forward

Symbol	Name	Function Class
Rr584323	regulatory region 584323	within coordinates
Rr584324	regulatory region 584324	1891 bp proximal