rs51963500 SNP Detail

Summary

• ID
  rs51963500
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:13153115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACTTAG CAGAGTGGTC
  CAGCAGCTGT GGCCCACGAT GCTTTAGACA GCCATGGAAA TGGGAAGAAT GGAGTTTCAG
  GTGTGGTCTT TTAACACTCA TGCACTCTTC TTTATACCAA CATGACTATA ATACATAATT
  TTGTTTATTT GGGAGACTGG GGATTAGAAC CACAACCTTC CTGAGTGCTG AGTATGTACA
  Y
  GTCCTTTAAG CACTATGCCC AGGCTTAGGT TTTAAATGGA AAAAGCACAT GACAACTGGC
  CTTAAGGTCC ACTAAAGGCG CACAGGTCTT ACTTGCAGTT CAATTAATAA ATGCTGAGAA
  AACACACGGG GGAAACTACA TAGGGAGCCT CATGGATCCA TTAACTGAAC ACTTGTTGGC
  TATGTGGACC AGCTCAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60864608	NES15985716	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51963500					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60864608	NES15985716	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:13153115 () rs orientation: forward

Symbol	Name	Function Class
Rr626556	regulatory region 626556	564 bp distal
Rr626557	regulatory region 626557	650 bp distal