rs51957624 SNP Detail

Summary

• ID
  rs51957624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146127847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAGTGTTG GACCCTACAG
  TCGTTTGGTT AGCAGACTTC CTCCTTCGGT CACCGCAGAC AGCTTCCTTT GCTGTGATTA
  CCCTTCTGAC TCCCTGTGAT CTTGCCTGAC CCTTCTTGAG GTCGCTTTCT GTGTCACTGG
  AACCTTTCCC GTCAGCTCCT TGCCCGTCCC TCCGTCTGAA ATGCTTCCTG TTTTCTCCTC
  M
  GGCAGCTTCA CAGTTTGTGG TCTTGCACTA AGCTCCTTGA TCCATTTGGA ATTAAAGTTT
  GCACAGGTGA GAGGAGGGCC CTCCTCCTCC TTCCCGGCCT GGGAATGGCC TGTCTTCTCT
  CCAGTGTATA TTTTTTAGAT CATGGTTAAA TACGAGGTGA CTGCAGCTGT GCGGTCTCTC
  TCTCTCCTCG GCCATATTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136044144	ENSMUSSNP501916	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss321010287	CHEV_3_146085056	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51957624					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146127847 () rs orientation: forward

Symbol	Name	Function Class
Rr587026	regulatory region 587026	1801 bp proximal
Ssx2ip	SSX family member 2 interacting protein	Intron