rs51957499 SNP Detail

Summary

• ID
  rs51957499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116287266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTGTCCT GAAACTCACT
  CTGTAGACCA GGCTGGCCTC GAACTCAGAA ATCCACCTGC CTCTGCCTCC CAAGTGCTGG
  GATTAAAGGC AGGTTGTCAT CATGCCTGGC CGATAAGACA GACTTTTAAC AATTTATGTT
  TCAGAATAAG ATGAGAGAGC TGGACGCTCA TACACTTACT TAGACCAAAT ATTTCTGAAG
  Y
  TGCTGTACAT GACAAGTTTT TATACTCTTC AAAAATCCCA TTTTAAAAGA TAAATGGAGT
  CTACAGAATT CCTGGGAACA TAAATTTAGG AAGAAGAAAA TGACTAAACA CAAGGAAAAC
  TGTCTCCAGA AAATGGTCAA GAAATACCGA AGAGCCCTCC TCTTCCTTCT CCCTCTCTTC
  TTGCTTCTGA GGAGCAACCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60437129	NES15943329	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51957499					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437129	NES15943329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116287266 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr583728	regulatory region 583728			1263 bp distal
Rr583729	regulatory region 583729			1880 bp proximal
Rtca	RNA 3'-terminal phosphate cyclase			Intron
				Noncoding-Transcript-Variant