rs51952420 SNP Detail

Summary

• ID
  rs51952420
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138221742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAG CCCTGCGACA CCAGGCTTGG
  S
  TCTGTGCATG GGCTCTGTGA AGGGC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147648539	ENSMUSSNP3106619	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321374266	CHEV_4_138050346	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51952420					SNP	G	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138221742 () rs orientation: forward

Symbol	Name	Function Class
Rr602944	regulatory region 602944	389 bp distal
Rr602945	regulatory region 602945	274 bp proximal
Rr602946	regulatory region 602946	1208 bp proximal
Rr602947	regulatory region 602947	1506 bp proximal
Rr602948	regulatory region 602948	1808 bp proximal