rs51951525 SNP Detail

Summary

• ID
  rs51951525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127743437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTTGTC TTGACTTCGT
  TTTTCTTCCC TGGATGGACC CTTCATGACA TCAACTCGGG AAAAAGGATC CTCTGAACTG
  GCTGAGCCCT CAGTGGGTTC CATAGTGACT GTCTTGCGTA GAACCTATAG GCCCGTGTTA
  AGTGTCTAGA TACGCACCTT TCTCTTAAAA CAGTTTGATT TAGCAGGGGT CACGAGGCCC
  Y
  GAGGGCTGCA TTTTAATATG TGCTTTGGGT GTAGGGTACA GACCTCGTAC CTGAGAAATC
  CTAGTCTATG GGGTAAACTG TTCTTCCAAG CACAGACACT ACTCTAGGTG GCTGAAGTGG
  TCCCTAGAGC TCCATCCTCT GCACGATGTA CCTGCCTTTC TTCTCTAGGC ACCTTCTGTT
  CTCTTTGATT TTTTTCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135875975	ENSMUSSNP2933145	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss320958561	CHEV_3_127652706	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51951525					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127743437 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	467 bp downstream
Rr584909	regulatory region 584909	1168 bp distal
Rr584910	regulatory region 584910	369 bp distal
Rr584911	regulatory region 584911	667 bp distal
Tssr31619	transcription start site region 31619	515 bp upstream