rs51945732 SNP Detail

Summary

• ID
  rs51945732
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:54622553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCCTCTG CAGTCCTACC
  AGGTGAATTT AACCTGTAAA GGGTCCTCTG AAGGGGAGAT GGTCAGGAAT GTCTGTTACC
  CGCTTGAGCT GGGTGTGATG AATCCAGGGG GTGATCCCAG CAACCTTGAT AGCAATGGGT
  GTGGTAAGAA CGATAGGATT CGGTCCATGA TTCCTATTGA GGAACAATAG GAAGGTTCCA
  M
  GATTCAGGGA CAATCAAGAA CACTTTTCTC GCCTGTATTC ACCTTGAGCC TACTTCCTTG
  TCCTAGCCCA ATGTCAAAAT CTTGCCTGAG CCTACTCCCT CGTCCTAGCC CAGTGTAAAT
  ATTGTCAATA TCCCTGAAGC AGCACCAAGA GCTCTCCACA ATGCAAGAGA CAGATCGAGG
  GAGGGCTGCA GGCCATTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149030196	ENSMUSSNP3679452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51945732					SNP	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:54622553 () rs orientation: forward

Symbol	Name	Function Class
Rr403785	regulatory region 403785	1141 bp upstream
Rr480227	regulatory region 480227	830 bp proximal
Rr480228	regulatory region 480228	928 bp proximal
Rr480229	regulatory region 480229	1548 bp proximal