rs51944685 SNP Detail

Summary

• ID
  rs51944685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109335856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCATTTA GAGCCAAGAC
  AGGAACATGT CTAGTTCAAG GCTAGCCAAT GTTACTTAAC AAGCAAACAA ACAATTCTGC
  CTCAAAAAAA GTCTATATTC AATCAAACAA AAAAATTTTT TTTTTGAAAT AGCATCTCAC
  TATATAGCTC TGGCTGTCCT GGAACTCCCT ACGTAGACCA GACTAGCCTC AAACTCAGAG
  R
  TCTACCTGTC TGTCTCTAAA ATGCTAGGAC TAAAGGTATG TGCCACCACA CCCTTTCTCC
  AACCAATGTG TTTCAAAACA GAACCTTGAG CTGGGCACAG AGATACAAAT CTATTATTCC
  AGCACTTGGA AGGTAGAAGT AGGAAGATCA GGAGTTAGAA ATCATTTTCC CATACAGAAT
  GAATTCCAGG CCAGTCTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss147197994	ENSMUSSNP1813946	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs51944685					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109335856 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14574	CpG island 14574	1641 bp distal
Rr597332	regulatory region 597332	1248 bp distal
Rr597333	regulatory region 597333	1809 bp distal
Tssr42768	transcription start site region 42768	1994 bp upstream
Tssr42769	transcription start site region 42769	1932 bp upstream