rs51942110 SNP Detail

Summary

• ID
  rs51942110
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:141174124 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGTCTGG CTGTCCTCGA
  ACTCGGTTTG TAGACCAGGC TGGCTTTGAG TTTACAGAGA TCCACCTGCC TGTGCCTCCA
  CACCCAGTGG GAAAGATTTA GCTTTAGATG GGTGGGGAAT GTGTGCTTGA GCAAAGGGAA
  GCCTGAGGTG GTGTGTGCCT AGAATCCCAG CACTAGGGAG GCCAAGACAG AACTGTGGGT
  M
  GATAGTTCAC CGGTGATTCA CTATATAGCC GGAGCCACAC TGCAAGCTCT AGGCCAGCCT
  GAGTTGTAGT GTGAGACCCT GTCTCAAGAA ACCCAAAACC CCACCAAAAA AGGTTGAAGT
  GACGCTCTCT GGTGGTGATC TTATGGCTGG CGTCCCGCAG AGGTCACCTG AGTGGGGGTA
  TGCGTTGGGG TGAGTGCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147737320	ENSMUSSNP6024624	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51942110					SNP	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141174124 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15230	CpG island 15230			1109 bp distal
Gm42337	predicted gene, 42337			Intron
Rr603769	regulatory region 603769			1100 bp distal
Rr603770	regulatory region 603770			1687 bp distal
Tssr44320	transcription start site region 44320			1373 bp upstream
Zbtb17	zinc finger and BTB domain containing 17			Intron
				Noncoding-Transcript-Variant