rs51940778 SNP Detail

Summary

• ID
  rs51940778
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55678894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAAAAATT GTAGGATGAA
  AAAGAGGTTT ATTACATGGC ATTTTCTCTA AATACCTTTT AGAAAAAAAT GGAGACTATA
  TAGTATCTAC AGCAGCTACT GATGTTGGCT GTAATTATGG TTCTAGGTAG CCTTATCCAA
  CAAGGGCTCA CTCTGACCAA GTGCCACCTG TAATACAGGA ATGGCTAGTG TCAGTCTTCA
  Y
  CGCAGAAGAA TATTTGGTCT ATGGGGGAGT TGTAAGAAAC ATGTAAACAA CAACAACAAC
  AAAGACCCTA CTATTTAATG CTCAATCAAG AGATACAGAT ATTTCCTCTG AGGGGCTTCA
  AAGGCAGTGC TAAACTTTTA TGCTTGTCCC TATGTGTTTC CAGTCTTCAC AGTTGCTCCC
  AATCCCGTTT ATCAGCTTCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133214585	ENSMUSSNP6935717	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51940778					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55678894 () rs orientation: forward

Symbol	Name	Function Class
Rr406317	regulatory region 406317	1790 bp proximal
Rr631015	regulatory region 631015	605 bp distal
Rr631016	regulatory region 631016	1932 bp proximal