rs51940003 SNP Detail

Summary

• ID
  rs51940003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:194859062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A GCCTGTAGCA AGGAGAGGAA GAGGACGGGG CTGGCTGCCT
  GCGGGGCTGG CTGCCTGCGG CTGGCTGTAA GCAGTGGGGA GCAGACCCTT AAATAGCATC
  R
  GCTCCGCGCG GTGGCGCTGG GTACTGAAGA TTTGTGAAGC ACAACTGCAG GTGACTAGGG
  GCGGAAGAGG CAGAGAGGGG CGGTCCCCGG GAAGTCTGCT T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146544337	ENSMUSSNP3265989	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51940003					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:194859062 () rs orientation: forward

Symbol	Name	Function Class
Cr2	complement receptor 2	mRNA-UTR
Rr426767	regulatory region 426767	within coordinates
Rr426768	regulatory region 426768	within coordinates
Rr426769	regulatory region 426769	118 bp proximal
Tssr384	transcription start site region 384	72 bp upstream
Tssr385	transcription start site region 385	60 bp upstream
Tssr15875	transcription start site region 15875	108 bp upstream
Tssr15876	transcription start site region 15876	29 bp upstream
Tssr15877	transcription start site region 15877	18 bp downstream