rs51934874 SNP Detail

Summary

• ID
  rs51934874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:33029935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAATTCTT CATTCCATCC
  AACCATACCT GCCTAGCAGA ACTATGGTTC CTTGTCCCCA CTACACCCAT TACAAATGCC
  CCACTAACAG AGAACCCCCG CCCTAGCTAC CTCTCATGGC GCTGAGCTCC TGTAGATCAC
  TGGGTCATTC ACTCAACAAA TATTCCAAAC ACCAAGTGCT GCCTCATGAC TCCTGGGACA
  Y
  TTGTATGAGC TGTCTATACC TTAACCGGTA CTTCTGTCTC AGGGCCCAAA TACAGTAGAA
  GTGAGATAAG GAAGGGAGGA TGGCTCTCAA TAACTGTGCT CCCTGGAGAC AAAGGCCATC
  TCCTCTCTCA GACCACCAGG CAAATGAGAA AAGGGAATAG CAACAGGCTT CATCTCCTGA
  AACCAGAGCC AGCTACATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60876155	NES15979039	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51934874					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60876155	NES15979039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33029935 () rs orientation: forward

Symbol	Name	Function Class
Chchd3	coiled-coil-helix-coiled-coil-helix domain containing 3	Intron
Rr628161	regulatory region 628161	992 bp distal