rs51933165 SNP Detail

Summary

• ID
  rs51933165
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:52207676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCATT GTCCATGCCT
  TTCCCAAGTA GACAGGACTC ATGGTCAGCA CATACCCCGA CGGGCAGACA GGTTAACCTT
  CAAATTCAAG CTCTTTGAAG AGGTGAAGAA AGTGAGAACC AATCATATAA GAGGTAATTT
  GGCTTCTGAG TATCTCGGCC GGGTGGGCTT GTATAGAACA AGTTGGCCAT AGGGCTTCTT
  K
  CTGTGTTGAA TTTTGTTCTT CCTTCTGAAA GAGAAGCCAC TGACATCAGG AACTGAAATT
  GCTAGAAAAT ACTTTTGGGA ACTTAACACT ACAAGGTAGA GGAAGGGTGC CTGCCAATGA
  AAAGGCTGCA GTGCGGTGGC TTTTCCCTTT AGAGAGGTCA CTTTACTTTC TCTTCTGTCA
  CTGAAAGCAT TTCATGGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss60410055	NES15916039	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs51933165					SNP	G	G	G	G	G	G	T	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60410055	NES15916039	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52207676 () rs orientation: forward

Symbol	Name	Function Class
Foxo1	forkhead box O1	Intron
Rr576497	regulatory region 576497	1061 bp distal
Rr576498	regulatory region 576498	584 bp distal