rs51931986 SNP Detail

Summary

• ID
  rs51931986
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65834857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACAGAATG CTAGGAACAA AAGGAACCTC AGACATGGTG
  TCTCCGACAT TCTGCCAACC TTCTCCAATA TATGACCTCA CTGGCAGTTG GGTTTTTTTT
  Y
  CCAGCTACTG TGATAAATCA CAATGTTGGG AGGCTACAGC AGTTCTGCTC ATGTTCAGAG
  CTAACGTTTC CTTTCTGCCT TCGACCTCAC AGGCCCTGGA                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss60417562	NES15922244	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs51931986					SNP	C	C	T	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60417562	NES15922244	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65834857 () rs orientation: forward

Symbol	Name	Function Class
Gm35039	predicted gene, 35039	within coordinates
Gm65138	predicted gene, 65138	within coordinates
Rr577757	regulatory region 577757	1778 bp distal
Rr577758	regulatory region 577758	within coordinates
Rr577759	regulatory region 577759	424 bp proximal
Rr577760	regulatory region 577760	1225 bp proximal
Rr577761	regulatory region 577761	1931 bp proximal
Tssr33470	transcription start site region 33470	1488 bp upstream
Tssr33471	transcription start site region 33471	1919 bp downstream
Tssr33472	transcription start site region 33472	1979 bp downstream