rs51921558 SNP Detail

Summary

• ID
  rs51921558
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94978807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGTCCT GAGTTCAATT
  CCCACCAACC ACATGGCAGT TCACAACCTT TCTTTAAGAA ATGGCTTTGA GCCGGGCGGT
  GGTGGCACAC GCCTTTAATC CCCACACTTG GGAGGCAGAG GCAGGCATAT TTCTGAGTTT
  GAGGCCAGCC TCGTCTACAA AGTGAGTTCC AGGACAGCCA GGGCTATACA GAGAAACCCT
  R
  TCTCGGGAAA AAAAAAAGGA AAAGGCTTTG AGCTATGCAG GAAGACCCAG TCTCAAAACA
  TAGAGTGCCA ACTTAGCCTT CACAAAGCTT AGGGTTCAAT GCCATCAGCA CTTAAATCCA
  GTGTGCTGGC ACACAATTGT AAACCCAGCA CTTGGGAGGC AGAAACTCAA TGATCAGTAG
  TCCAAGGCCA GCACTGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135509814	ENSMUSSNP1992202	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51921558					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94978807 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pip5k1a	phosphatidylinositol-4-phosphate 5-kinase, type 1 alpha			Intron
				Noncoding-Transcript-Variant
Rr580809	regulatory region 580809			1736 bp proximal