rs51920866 SNP Detail

Summary

• ID
  rs51920866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:100691771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGCCAAG GGTGTGTTGA
  GCACTGTCAT AGATAAGTGA AAGCGATGGC CAGAGGAGAA TTGGGTACAG GAGAGGAACA
  CGGGGTTTCT TCTCTGCAGC CATCTTTATA TATATCTGGT GGTCAGATAT AAAAAGACAT
  GAAGTGCGCG TCTCTCCTTC AGAGGTGATG AGGAAAACAT CCTGGTGCTG CACTTTCGAG
  R
  GTCTTTAGGA CTAGAGAAAA CCACCATCTT CAAGCTACTG GTTTCTCATC CTTTCCTGAA
  CAACTAGCTG CAGGCTTGAC CATCGCTGAG AAAGTCTCAT TTAGCTGCAG CCTTCTCACT
  GAGAGCCGCA GGTGGCTTTA AGAGACGGGT CTGTGGATAT TTCTAGATCT TGACCAACTT
  TTTTGAGACA CATTCACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147117562	ENSMUSSNP5425006	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321228032	CHEV_4_100507179	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51920866					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:100691771 () rs orientation: forward

Symbol	Name	Function Class
Cachd1	cache domain containing 1	Intron
Rr596037	regulatory region 596037	845 bp distal