rs51918478 SNP Detail

Summary

• ID
  rs51918478
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109266105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTAACAAAT GTGAAATGTG AAATGTGCAG GGCAGTGGTG
  GCACACACCT TTAGTCCCAG CACTTGGGAG GCAGAGGCAG GTGGATTTCT TTCTGAGTGC
  G
  AGACCAGCCT GGTCTACAGA GTGAGTTCCA GGACAGCCAG GGCTACACAG AGAAACTCTG
  TTTCAAAACA AAACAAAACA AAACAATGTG TGTGTGTGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147197619	ENSMUSSNP1270853	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51918478					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109266105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr597313	regulatory region 597313			1788 bp distal
Rr597314	regulatory region 597314			500 bp distal
Rr597315	regulatory region 597315			1580 bp proximal
Tssr38346	transcription start site region 38346			1789 bp downstream
Tssr38347	transcription start site region 38347			1743 bp downstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant