rs51916087 SNP Detail

Summary

• ID
  rs51916087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151809181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTCTGT ATGTCTGTGT
  ACCTGTATGT CTGTGTGTGT CAAGTGTGTG TGTGTGTGTG TGTGTATGTG TGTGTGTGTG
  TATCAGTGTG TCTTTGTGTG TCTCATGTGT GACATATCTG TGTGGAGGTC AGAGGCCGAC
  ATGAAGTGCT CTCCTCAATT GTTCTCCTTT ATAGTTTTCA AGTCAGCGTC TCTCCTTGAG
  Y
  CTGGAGCTTA CTGATTCAGC TCGCAAACAC AAGGGAGCCT CCAGTCTCCA CCTCCCCCTG
  CTGGGATCAT CAGTGTGTGT GAGTGTGTAC ATGGGGAAGT GCCAGTGCAT TGTGTGTGAC
  TGTGTGTATG TGTGAGGAGT GTAGGTCTGT GTATTGGTAT AAGTGTTTTT TGTGTGCATG
  TGTGTAATAT TTGACTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136100781	ENSMUSSNP7223080	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028027	CHEV_3_151766508	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51916087					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151809181 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13939	CpG island 13939			1884 bp proximal
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			517 bp downstream
Rr587451	regulatory region 587451			1873 bp distal
Rr587452	regulatory region 587452			1255 bp proximal
Rr587453	regulatory region 587453			1983 bp proximal