rs51915894 SNP Detail

Summary

• ID
  rs51915894
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144113231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATGGGCT GTGCAGACCC ACTTGCGACA TGTCCCGAGT
  CTGGACCACG AGGTCACAGT AGCACCCACT TTTTAAAGGG CGGCGTGAGG AATAGATGAG
  M
  GATGCCCATA CAGAATATTT AGTAAGAGTT TGGTATGTAG ATGTAGGTGT TTAACTGTTA
  ATTAAGACTT GTGAATTTGT TGGGGGGGGG CAGATTGTA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147789075	ENSMUSSNP5028352	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51915894					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144113231 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12351	CpG island 12351			within coordinates
Mgme1	mitochondrial genome maintenance exonuclease 1			Intron
				mRNA-UTR
Rr397362	regulatory region 397362			259 bp downstream
Rr397363	regulatory region 397363			105 bp upstream
Rr566424	regulatory region 566424			1799 bp distal
Rr566425	regulatory region 566425			750 bp distal
Rr566426	regulatory region 566426			360 bp distal
Rr566427	regulatory region 566427			within coordinates
Snx5	sorting nexin 5			518 bp upstream
Tssr20524	transcription start site region 20524			720 bp downstream
Tssr20525	transcription start site region 20525			639 bp downstream
Tssr20526	transcription start site region 20526			362 bp downstream
Tssr20527	transcription start site region 20527			256 bp downstream
Tssr20528	transcription start site region 20528			317 bp upstream
Tssr26594	transcription start site region 26594			1243 bp upstream
Tssr26595	transcription start site region 26595			825 bp upstream
Tssr26596	transcription start site region 26596			778 bp upstream
Tssr26597	transcription start site region 26597			511 bp upstream
Tssr26598	transcription start site region 26598			464 bp upstream
Tssr26599	transcription start site region 26599			448 bp upstream