rs51908636 SNP Detail

Summary

• ID
  rs51908636
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:143630068 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGCTGAG TCTTATCCCC
  AGCACGGACG CGGAAAGCCA GGTGTGGAGC ATCCATCAGT AGCCCAGCGC TGGGGAACAG
  AGAAGCCCTG GAACTCATTG GTCTACCGCC ATCTGTCTCA GAAGTAAGAC CAAGAGCGAA
  AAGAACGCAC ACTACATCGA CCTCTGGATT CTTGCACACA TGCACACGCA AAGGGTAGAG
  S
  TAGCATGTGG CCTCAGTGGG AGCTCACCTA TCCTTGGACA GGCACCAGAG TGTCCTTTCT
  GTTCAAGGAT GTGATGTCAT TTAGGAGTTT TTCTGTAAAA AGAGACAATG TTTTCATAGT
  AGACCCTCAA CTAAAAGACT TAATTGGTGT GCCTGAAACC AGCTTCCAGA GAGCCTGAAA
  TGGGAGCATT CAGGGTCAGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60852182	NES15998099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51908636					SNP	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60852182	NES15998099	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:143630068 () rs orientation: forward

Symbol	Name	Function Class
Cyth3	cytohesin 3	Intron
Rr624267	regulatory region 624267	1304 bp distal
Rr624268	regulatory region 624268	1171 bp proximal
Rr624269	regulatory region 624269	1740 bp proximal