rs51904853 SNP Detail

Summary

• ID
  rs51904853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:56299204 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTTTCTCT TTAACCATGA
  TTTCATAGTG TTCATTCATT CCTGCCACAT ATAGTTTAGG GTGGCACATG TCAGAGTCAA
  CAACAATACA AGCTGGTCTA GAACTTATTG TGGAGGCTGG TCTCTAAGTC ACAGCAGTCC
  TCCTGCCTCA GAGCTCCTGA CTGCTGGAAT TCCAGGCATT AGGCCCACAT ATGGCTCCCT
  R
  GCCCATATTT CCCGGATTCT ATGATAGAAA GGCAAAGTCT GCGTATCTGT TTAGGACTCA
  CAATTGCCAT ATATGCTGCT TAAACTCTAG TGTATCTAGC CATGAATATA CAATTTCTGA
  GTATAATTAT ACCTGAAATA GCTAAAAATA GATATATAGT AATATTCTGC ATCCTTATTC
  ATCATATTTT ATATGTAGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133224517	ENSMUSSNP6020294	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51904853					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:56299204 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pde1c	phosphodiesterase 1C			Intron
				Noncoding-Transcript-Variant
Rr631057	regulatory region 631057			575 bp proximal