rs51900374 SNP Detail

Summary

• ID
  rs51900374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:162784429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAATCTTT AAATAAGTAG
  AGTCTGGATA GAAATAAGAA AACAGTGATG TGTGTATAAA GAGTCTTCTA TGGATATGGT
  TATCTCCATC CTTTTCTGAC TAATCTTGTT CCTAAAAATA CAAAATGATT AAAACCATGG
  AGGCAAAGCA GAACACATGT AACGAATAGT TAAGATCTAC ATAAATTTAA ACTTGATCAC
  W
  GCAATTGGAA GAATATACCA TTTAAATGAG TATTTTTCAT CCGGGCTAAG TCTAAAGATT
  TGGCTGATGG CTACTACCTA AGCCAAATAG ACCTGTTTTC TGCAAAATAA GGGAGTAGAA
  TTAAAAATCA GTGTGTAAGC GGGAACTGGG GCGCTAAGAG TTAACCTCTT TCACATGGAT
  CAGTCAATCA GAAGACATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148199729	ENSMUSSNP5847240	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51900374					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:162784429 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
L3mbtl1	L3MBTL1 histone methyl-lysine binding protein			mRNA-UTR
				Noncoding-Transcript-Variant
Rr569242	regulatory region 569242			475 bp proximal
Rr569243	regulatory region 569243			976 bp proximal
Rr569244	regulatory region 569244			1490 bp proximal
Tssr21421	transcription start site region 21421			975 bp upstream